Genetic classification of severe early childhood caries by use of subtracted DNA fragments from Streptococcus mutans.

نویسندگان

  • Deepak Saxena
  • Page W Caufield
  • Yihong Li
  • Stuart Brown
  • Jinmei Song
  • Robert Norman
چکیده

Streptococcus mutans is one of several members of the oral indigenous biota linked with severe early childhood caries (S-ECC). Because most humans harbor S. mutans, but not all manifest disease, it has been proposed that the strains of S. mutans associated with S-ECC are genetically distinct from those found in caries-free (CF) children. The objective of this study was to identify common DNA fragments from S. mutans present in S-ECC but not in CF children. Using suppressive subtractive hybridization, we found a number of DNA fragments (biomarkers) present in 88 to 95% of the S-ECC S. mutans strains but not in CF S. mutans strains. We then applied machine learning techniques including support vector machines and neural networks to identify the biomarkers with the most predictive power for disease status, achieving a 92% accurate classification of the strains as either S-ECC or CF associated. The presence of these gene fragments in 90 to 100% of the 26 S-ECC isolates tested suggested their possible functional role in the pathogenesis of S. mutans associated with dental caries.

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منابع مشابه

Genetic Classification of Severe Early Childhood Caries Using 1 Subtracted DNA

1 Streptococcus mutans is one of several members of the oral indigenous biota linked with severe 2 early childhood caries (S-ECC). Because most humans harbor S. mutans, but not all manifest 3 disease, it has been proposed that the strains of S. mutans associated with S-ECC are 4 genetically distinct from those found in caries free (CF) children. The objective of this study was 5 to identify com...

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Identification of unique bacterial gene segments from Streptococcus mutans with potential relevance to dental caries by subtraction DNA hybridization.

Using DNA subtractive hybridization, 49 unique gene segments were identified from a strain of Streptococcus mutans that was isolated from a patient with severe early childhood caries (S-ECC). Further hybridization with DNA from other S. mutans strains isolated from both caries-active and caries-free subjects yielded five unique sequences of DNA common to strains associated with S-ECC.

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عنوان ژورنال:
  • Journal of clinical microbiology

دوره 46 9  شماره 

صفحات  -

تاریخ انتشار 2008